Publications

Michael Shamash, Sinha A, Maurice CF (2024). Improving gut virome comparisons using predicted phage host information. bioRxiv.

Michael Shamash, Kapoor S, Maurice CF (2024). Optimization of an improved, time-saving, and scalable, protocol for the extraction of DNA from diverse viromes. bioRxiv.

Pidgeon R, Mitchell S, Michael Shamash, Suleiman L, Dridi L, Maurice CF, Castagner B (2024). The dietary ellagitannin metabolite urolithin A is produced by a molybdenum-dependent dehydroxylase encoded by prevalent human gut Enterocloster spp.. bioRxiv.

Sinha A, Li Y, Khan Mirzaei M, Michael Shamash, Samadfam R, King IL, Maurice CF (2022). Transplantation of bacteriophages from ulcerative colitis patients shifts the gut bacteriome and exacerbates severity of DSS-colitis. Microbiome.

Sutcliffe SG, Michael Shamash (2022). Inducing prophages in gut bacteria with common oral medications — Behind the paper. Capsid & Tail.

Michael Shamash, Maurice CF (2021). OnePetri: Accelerating Common Bacteriophage Petri Dish Assays with Computer Vision. PHAGE: Therapy, Applications, and Research.

PDF Code Dataset DOI

Mulla Y, Enriquez K, Taslem Mourosi J, Muscat K, Michael Shamash (2021). A Window into Evergreen 2021 from the Next Generation of Phage Researchers. PHAGE: Therapy, Applications, and Research.

Michael Shamash, Maurice CF (2021). Phages in the infant gut: a framework for virome development during early life. The ISME Journal.

PDF Project DOI

Sutcliffe SG, Michael Shamash, Hynes AP, Maurice CF (2021). Common Oral Medications Lead to Prophage Induction in Bacterial Isolates from the Human Gut. Viruses.

PDF Dataset Project DOI